Online courses
RNA-Seq Analysis
Material type: Lectures
, Notes
Course Level: Basic
Submitted by Mr Jean Safari
-
Overview of an analysis workflow for expression analysis of RNA-seq data
Introduction to Unix
Material type: Lectures
, Notes
Course Level: Basic
Submitted by Mr Jean Safari
-
Basic introduction to Unix, Linux, command line
Parsing data records using Python programming
Material type: Lectures
, Notes
Course Level: Basic
Submitted by Mr Jean Safari
-
Introduction to parsing data files using Python with practical examples given
Linear Motifs and Phosphorylation sites
Material type: Lectures
, Notes
Course Level: Basic
Submitted by Mr Jean Safari
-
Introduction to linear motifs and phosphorylation sites (P-sites). Overview of computational tools and approaches available to predict linear motifs and P-sites.
Introductions to Linux, Perl and Python
Material type: Lectures
, Notes
, Exercises
, Solutions
Course Level: Basic
Submitted by Mr Jean Safari
-
Introduction to Unix, Perl and Python for bioinformatics analyses.
Interpreting phylogenies
Material type: Lectures
, Notes
, Exercises
, Solutions
Course Level: Basic
, Intermediate
Submitted by Mr Jean Safari
-
Application of phylogenetic approaches, introduction to phylogenetic terms and methods, multiple sequence alignment theory, structural alignments, interpretation of phylogenetic trees
Introduction to Bioinformatics
Material type: Lectures
, Notes
Course Level: Beginner
Submitted by Mr Jean Safari
-
General introduction to the concept of bioinformatics focusing on the generation and accuracy of data in online databases using UniProt as an example
Introduction to multiple sequence alignments
Material type: Lectures
, Notes
Course Level: Basic
Submitted by Mr Jean Safari
-
An introduction to multiple sequence alignments(MSAs) for biologists with a focus of protein alignments. Description of methods to build MSAs as well as the interpretation of MSAs(structural and evolutionary). Includes an introduction to JalView which is used for the visualisation and manipulation of MSAs
Summarising sets of phylogenies
Material type: Lectures
, Notes
Course Level: Basic
, Intermediate
Submitted by Mr Jean Safari
-
Basic introduction to concepts associated with methods used to summarise sets of phylogenies - emphasis on consensus trees and split networks
Academic writing
Material type: Lectures
, Notes
Course Level: Basic
, Intermediate
, Advanced
Submitted by Mr Jean Safari
-
First year report, postgraduate qualitative research and online writing course