Lectures/Webinars
Genotype calling from chip data - Lecture 3 H3ABioNet 2018 GWAS Lecture series
Submitted by Dr Verena Ras -
Material Type:
Authors:
Ayton Meintjes
Institute:
N/A
Summary:
The third of a series of seven H3ABioNet online lectures for Genome Wide Association Studies (GWAS) will introduce genotyping SNP array chips with particular emphasis on the H3Africa genotype chip. The lecture will cover common file formats when obtaining genotyping chip data from a service provider such as Illumina and software used for genotype calling. This lecture will also cover genotype calling, sample and probe quality control, probe viewing and exporting of data using GenomeStudio. Converting the data to PLINK format and some tips on troubleshooting and common pitfalls will be discussed.
Level:
Advanced
Organiser:
H3ABioNet
Classification:
Computational Biology >> Molecular Genetics › Genetic variation
Experimental Design and Studies >> GWAS study
Informatics >> Bioinformatics
Available for download?
Yes
Playlist(s):
Keyword(s):
Genetics, Genomics, Nucleic acids analysis, GWAS, Genome wide association studies, SNP