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Bioinformatics

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Open-access journal - International Journal of Biometrics and Bioinformatics (IJBB)
#Journal
Submitted by o.obazee@dkfz.de -

IJBB is a peer-review open access scientific journal that publishes high quality research papers collected from well known scientists, researchers and industrialists all over the world. IJBB emphasizes the role of mathematics, statistics, image processing and computer science & engineering into biology in general but particularly in the field of biomedical image processing, biomedical…

Open-access journal - International journal of Bioinformatics research
#Journal
Submitted by o.obazee@dkfz.de -

Journal publishes original Research Article, Editorial, Review Article, Rapid Communication, Case Report, Short Communications, Conference Proceedings, Special Issue Article, Mini Review, Annual Meeting Abstract, Letters, Observations with analysis and discussion.

Open-access journal - Evolutionary bioinformatics
#Journal
Submitted by o.obazee@dkfz.de -

An international, peer-reviewed journal focusing on evolutionary bioinformatics. There is growing awareness that to understand organismal form and function, through the use of molecular, genetic, genomic, and proteomic data, due consideration must be given to an organism's evolutionary context - history constrains the path an organism is obliged to take, and leaves an indelible mark on its…

Open-access journal - EURASIP Journal on Bioinformatics and Systems Biology
#Journal
Submitted by o.obazee@dkfz.de -

The journal is intended to offer a common platform for scientists from several areas including signal processing, bioinformatics, statistics, biology and medicine, who are interested in the development of algorithmic, mathematical, statistical, modeling, simulation, data mining, and computational techniques, as demanded by various applications in genomics, proteomics, system biology, and more…

Open-access journal - BMC Bioinformatics
#Journal
Submitted by o.obazee@dkfz.de -

All articles published by BMC Bioinformatics are made freely and permanently accessible online immediately upon publication, without subscription charges or registration barriers. Further information about open access can be found here. As authors of articles published in BMC Bioinformatics you are the copyright holders of your article and have granted to any third party, in advance and in…

LEfSe
#Software
Submitted by kgurwitz@gmail.com -

In determining differences between two or more biological conditions, LEfSe "emphasizes both statistical significance and biological relevance, allowing researchers to identify differentially abundant features that are also consistent with biologically meaningful categories (subclasses). LEfSe first robustly identifies features that are statistically different among biological classes. It then…

MetaPhIAn2
#Software
Submitted by kgurwitz@gmail.com -

"a computational tool for profiling the composition of microbial communities (Bacteria, Archaea, Eukaryotes and Viruses) from metagenomic shotgun sequencing data with species level resolution." - from the website

Workflow available in Galaxy.

HUMAnN2
#Software
Submitted by kgurwitz@gmail.com -

"HUMAnN is a pipeline for efficiently and accurately profiling the presence/absence and abundance of microbial pathways in a community from metagenomic or metatranscriptomic sequencing data." - from the website. This tool uses 'functional profiling' to ask "What are the microbes in my community-of-interest doing (or capable of doing)?"

VarElect
#Software
Submitted by kgurwitz@gmail.com -

*Interpret next generation sequencing results

*Identify & Prioritize genes and variants according to their relevance to diseases and phenotypes of interest

*Explore relationships between genes and gene variants and selected diseases or phenotypes via relevant pathways, interaction networks and publications

*Discover biomarkers for diseases

-from the website…

openSNP
#Database
Submitted by kgurwitz@gmail.com -

"openSNP allows customers of direct-to-customer genetic tests to publish their test results, find others with similar genetic variations, learn more about their results by getting the latest primary literature on their variations, and help scientists find new associations." - from the website

This data is publicly available for download.