Bioinformatics
48 results - showing 41 - 48
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STRING: functional protein association networks#DatabaseSubmitted by jpmaree5@gmail.com - Complete knowledge of all direct and indirect interactions between proteins in a given cell would represent an important milestone towards a comprehensive description of cellular mechanisms and functions. Although this goal is still elusive, considerable progress has been made—particularly for certain model organisms and functional systems. Currently, protein interactions and associations are… |
ModBase#DatabaseSubmitted by jpmaree5@gmail.com - MODBASE is a queryable database of annotated protein structure models. The models are derived by ModPipe, an automated modeling pipeline relying on the programs PSI-BLAST and MODELLER. The database also includes the fold assignments and alignments on which the models were based. MODBASE contains theoretically calculated models, which may contain significant errors, not experimentally… |
Chimera extensible molecular modeling system#SoftwareSubmitted by jpmaree5@gmail.com - UCSF Chimera is a highly extensible program for interactive visualization and analysis of molecular structures and related data, including density maps, supramolecular assemblies, sequence alignments, docking results, trajectories, and conformational ensembles. High-quality images and animations can be generated and very user friendly! |
Molecular Biology of the Cell. 4th edition#BookSubmitted by vnembaware - This is a book which covers the basics of molecular biology. According to my knowledge it is similar to text-books prescribed to many biology/molecular biology under-graduate courses. |
Genomes. 2nd edition#BookSubmitted by vnembaware - Provides a basic introduction to molecular biology and genomics. Covers a range of organisms including yeast, humans and bacteria. |
BioWardrobe Experiment Management System#SoftwareSubmitted by jpmaree5@gmail.com - High-throughput sequencing has revolutionized biology by enhancing our ability to perform genome-wide studies. However, due to lack of bioinformatics expertise, modern technologies are still beyond the capabilities of many laboratories. The BioWardrobe platform allows users to store, visualize and analyze epigenomics and transcriptomics data using a biologist-friendly web interface, without… |
HistoneCoder#SoftwareSubmitted by jpmaree5@gmail.com - Histone Coder counts the number of MS/MS ions in a given spectrum to determine the unambiguous localization of a post-translational modification (PTM). The software lists number and type of site determining ions found between the assigned PTM localization by Mascot (Matrix Science) and the closest other amino acids which can host the modification. The PTMs included in the script are… |
Current Topics in Genome Analysis#DatabaseSubmitted by vnembaware - Series of seminars hosted by the NHGRI and presented by guest lectures on different topics. Topics include genomics and bioinformatics. |