Biological data resources

11 results - showing 1 - 10

Results list
EBI Training Online
Submitted by vnembaware - Mon, 07/17/2017 - 20:08

Useful webinars for Ensembl LRG and sequence similarity (from Angela)

eBiomics: Good practices and specific methods for using bioinformatics resources
Submitted by - Thu, 06/23/2016 - 22:51

eBiomics is composed of several interconnected sections that can be accessed through different interactive activities. The 5 main sections of the website are: Resources ( a catalogue of selected databases and data analysis software that are briefly described and illustrated with examples); Conceptual flowcharts (a collection of clickable images picturing typical data analysis flows in…

Open-access journal - International Journal of Bioscience, Biochemistry and Bioinformatics
Submitted by - Mon, 04/11/2016 - 17:40

International Journal of Bioscience, Biochemistry and Bioinformatics (IJBBB) is an international academic open access journal which opens to the world. It aims to promote the integration of bioscience, biochemistry and bioinformatics. The focus is to publish papers on state-of-the-art bioscience, biochemistry and bioinformatics. Submitted papers will be reviewed by technical committees of the…

Open-access journal - EURASIP Journal on Bioinformatics and Systems Biology
Submitted by - Mon, 04/11/2016 - 08:07

The journal is intended to offer a common platform for scientists from several areas including signal processing, bioinformatics, statistics, biology and medicine, who are interested in the development of algorithmic, mathematical, statistical, modeling, simulation, data mining, and computational techniques, as demanded by various applications in genomics, proteomics, system biology, and more…

Open-access journal - BMC Bioinformatics
Submitted by - Mon, 04/11/2016 - 08:00

All articles published by BMC Bioinformatics are made freely and permanently accessible online immediately upon publication, without subscription charges or registration barriers. Further information about open access can be found here. As authors of articles published in BMC Bioinformatics you are the copyright holders of your article and have granted to any third party, in advance and in…

Submitted by - Fri, 04/08/2016 - 22:22

"openSNP allows customers of direct-to-customer genetic tests to publish their test results, find others with similar genetic variations, learn more about their results by getting the latest primary literature on their variations, and help scientists find new associations." - from the website
This data is publicly available for download.

Submitted by - Fri, 04/08/2016 - 08:31

"A curated, searchable portal of inter-related data standards, databases, and policies in the life, environmental and biomedical sciences" - from the website.
Aimed at - researchers, curators, database developers, funders, librarians, educators

MetaRef Database
Submitted by - Fri, 04/08/2016 - 08:15

catalog of characterized clade-specific microbial genes.

PubMed Browser - Human Phenotype Ontology (HPO)
Submitted by - Fri, 04/01/2016 - 22:23

Retrieve publications quickly using HPO and MeSH terms.
Gain quickly insight into pair-wise associations, including HPO - HPO, MeSH - HPO or MeSH - MeSH
Download HPO and MeSH annotations associated with a publication in a tabular format
Download HPO annotations for MeSH diseases

Please see this paper outlining the PubMed Browser HPO search tool:

Tudor Groza, et…

Submitted by - Fri, 04/01/2016 - 08:34

"The DisGeNET database integrates human gene-disease associations (GDAs) from various expert curated databases and text-mining derived associations including Mendelian, complex and environmental diseases (Piñero et al., 2015; Bauer-Mehren et al, 2011). The integration is performed by means of gene and disease vocabulary mapping and by using the DisGeNET association type ontology." - from the…