Ontologies, nomenclature and Classification

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Open-access journal - Evolutionary bioinformatics
Submitted by o.obazee@dkfz.de - Mon, 04/11/2016 - 08:09

An international, peer-reviewed journal focusing on evolutionary bioinformatics. There is growing awareness that to understand organismal form and function, through the use of molecular, genetic, genomic, and proteomic data, due consideration must be given to an organism's evolutionary context - history constrains the path an organism is obliged to take, and leaves an indelible mark on its…

MetaRef Database
Submitted by kgurwitz@gmail.com - Fri, 04/08/2016 - 08:15

catalog of characterized clade-specific microbial genes.

PubMed Browser - Human Phenotype Ontology (HPO)
Submitted by kgurwitz@gmail.com - Fri, 04/01/2016 - 22:23

Retrieve publications quickly using HPO and MeSH terms.
Gain quickly insight into pair-wise associations, including HPO - HPO, MeSH - HPO or MeSH - MeSH
Download HPO and MeSH annotations associated with a publication in a tabular format
Download HPO annotations for MeSH diseases

Please see this paper outlining the PubMed Browser HPO search tool:

Tudor Groza, et…

Submitted by kgurwitz@gmail.com - Fri, 04/01/2016 - 08:34

"The DisGeNET database integrates human gene-disease associations (GDAs) from various expert curated databases and text-mining derived associations including Mendelian, complex and environmental diseases (Piñero et al., 2015; Bauer-Mehren et al, 2011). The integration is performed by means of gene and disease vocabulary mapping and by using the DisGeNET association type ontology." - from the…

Advances in Bioinformatics
Submitted by vnembaware - Wed, 03/09/2016 - 23:41

"​Advances in Bioinformatics is a peer-reviewed, open access journal that publishes original research articles as well as review articles in all areas of bioinformatics. Advances in Bioinformatics currently has an acceptance rate of 17%. The average time between submission and final decision is 60 days and the average time between acceptance and publication is 35 days." Copied from Journal…