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Structure analysis

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I-TASSER (Iterative Threading ASSEmbly Refinement)
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"I-TASSER server is an on-line platform for protein structure and function predictions. It allows academic users to automatically generate high-quality predictions of 3D structure and biological function of protein molecules from their amino acid sequences. I-TASSER (as 'Zhang-Server') was ranked as the No 1 server for protein structure prediction in recent community-wide CASP7, CASP8, CASP9,…

Advances in Bioinformatics
Submitted by vnembaware -

"​Advances in Bioinformatics is a peer-reviewed, open access journal that publishes original research articles as well as review articles in all areas of bioinformatics. Advances in Bioinformatics currently has an acceptance rate of 17%. The average time between submission and final decision is 60 days and the average time between acceptance and publication is 35 days." Copied from Journal…

Submitted by -

MODBASE is a queryable database of annotated protein structure models. The models are derived by ModPipe, an automated modeling pipeline relying on the programs PSI-BLAST and MODELLER. The database also includes the fold assignments and alignments on which the models were based. MODBASE contains theoretically calculated models, which may contain significant errors, not experimentally…

Chimera extensible molecular modeling system
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UCSF Chimera is a highly extensible program for interactive visualization and analysis of molecular structures and related data, including density maps, supramolecular assemblies, sequence alignments, docking results, trajectories, and conformational ensembles. High-quality images and animations can be generated and very user friendly!