Lectures/Webinars
Statistical models used for GWAS - Lecture 7 H3ABioNet 2018 GWAS Lecture series
Material type:
Lecture notes/Slides
Submitted by Dr Verena Ras
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Year created: 2018
Year latest update: 2018
Summary:
The seventh and last lecture of the H3ABioNet 2018 GWAS lecture series will cover different types of GWAS depending on data designs: Population-based GWAS (for case/control design or for quantitative traits) and Family-based GWAS (for independent trio data or large pedigrees). This lecture will also provide an overview of test statistics for multi…
Genetics, Genomics, Nucleic acids analysis, GWAS, Genome wide association studies
Imputation and use in GWAS - Lecture 6 H3ABioNet 2018 GWAS Lecture series
Material type:
Lecture notes/Slides
Submitted by Dr Verena Ras
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Year created: 2018
Year latest update: 2018
Summary:
The sixth of a series of seven H3ABioNet online lectures for Genome Wide Association Studies (GWAS) will introduce the fundamentals of genotype imputation and its importance in GWAS. This lecture will cover the reference panels, file formats, algorithms and tools commonly used for imputation. It will discuss the assessment of the quality of…
Genetics, Genomics, Nucleic acids analysis, GWAS, Genome wide association studies
Population structure in GWAS - Lecture 5 H3ABioNet 2018 GWAS Lecture series
Material type:
Lecture notes/Slides
Submitted by Dr Verena Ras
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Year created: 2018
Year latest update: 2018
Summary:
The fifth of a series of seven H3ABioNet online lectures for Genome Wide Association Studies (GWAS) will introduce the concept of population structure/stratification (PS) and suggest why it is critical to consider PS in a GWAS. The lecture will begin by familiarizing the types of PS that are encountered and explain the factors that could cause…
Genetics, Genomics, Nucleic acids analysis, GWAS, Genome wide association studies
Quality control and its importance in GWAS - Lecture 4 H3ABioNet 2018 GWAS Lecture series
Material type:
Lecture notes/Slides
Submitted by Dr Verena Ras
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Year created: 2018
Year latest update: 2018
Summary:
In the fourth of a series of seven H3ABioNet online lectures for Genome Wide Association Studies (GWAS), the importance of doing good quality control for a GWAS will be discussed. The lecture will cover the types of errors one should control for, the specific bioinformatics tools used for quality control. Specific sample and SNP quality control…
Genetics, Genomics, Nucleic acids analysis, GWAS, Genome wide association studies
Genotype calling from chip data - Lecture 3 H3ABioNet 2018 GWAS Lecture series
Material type:
Lecture notes/Slides
Submitted by Dr Verena Ras
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Year created: 2018
Year latest update: 2018
Summary:
The third of a series of seven H3ABioNet online lectures for Genome Wide Association Studies (GWAS) will introduce genotyping SNP array chips with particular emphasis on the H3Africa genotype chip. The lecture will cover common file formats when obtaining genotyping chip data from a service provider such as Illumina and software used for genotype…
Genetics, Genomics, Nucleic acids analysis, GWAS, Genome wide association studies, SNP
Overview of Genome Wide Association Studies and study designs - Lecture 2 H3ABioNet 2018 GWAS Lecture Series
Material type:
Lecture notes/Slides
Submitted by Dr Verena Ras
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Year created: 2018
Year latest update: 2018
Summary:
The second of a series of seven online lectures for Genome Wide Association Studies (GWAS) will provide a basic overview on genome-wide association studies (GWAS). This is timely with the H3Africa genotyping data becoming available for several of the H3Africa research groups. To enable genomic research, the H3Africa Consortium had to build some of…
Genetics, Genomics, Nucleic acids analysis, GWAS, Genome wide association studies
Computational requirements for running the H3ABioNet GWAS workflows. - Lecture 1 H3ABioNet 2018 GWAS Lecture series
Material type:
Lecture notes/Slides
Submitted by Dr Verena Ras
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Year created: 2018
Year latest update: 2018
Summary:
The first of a series of seven online lectures for Genome Wide Association Studies (GWAS) will cover the technical requirements for setting up a your computational environment for running the H3ABioNet GWAS workflows. In this inaugural lecture of the series, Prof. Hazelhurst will cover the the following topics:
1. Installing and using…
Genetics, Genomics, Nucleic acids analysis, GWAS, Genome wide association studies
Advanced Training 2022. Kilifi, Kenya, Day 4
Material type:
Videos/Audio
Submitted by Mr Tony Li
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Year created: 2022
Year latest update: 2022
Summary:
N/A
Nextflow, CWL