Courses
African Genomic Medicine Training Initiative (AGMT)
Module: Advanced Molecular Pathology
Material type: Slides
, Videos
, Exercises
Course Level: Beginner
Submitted by Ms Thandeka Mavundla
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Description:
The information provided here is from the 2023 (last) AGMT iteration. Should AGMT run again, will need to provide updated links.
SARS-CoV-2 NGS
Module: Module 3: Oxford Nanopore Technologies Workflow
Material type: Exams
, Lecture notes
, Videos
Course Level: Beginner
, Intermediate
Submitted by Mr Tony Li
-
Description:
Tony, the online course is in English. Self paced learning.
SARS-CoV-2 NGS
Module: Module 2: Wet lab and sample preparation
Material type: Lecture notes
, Videos
Course Level: Beginner
, Intermediate
Submitted by Mr Tony Li
-
Description:
Tony, the online course is in English. Self paced learning.
SARS-CoV-2 NGS
Module: Module 1: Introduction to Genomic Epidemiology & NGS
Material type: Exams
, Lecture notes
, Videos
Course Level: Beginner
, Intermediate
Submitted by Mr Tony Li
-
Description:
Tony, the online course is in English. Self paced learning.
Introduction To Bioinformatics Analysis Of Plasmodium Falciparum Genome Data Training 2022
Module: 6. Snakemake & R programming.
Material type: Lecture notes
, Videos
Course Level: Beginner
, Intermediate
Submitted by Mr Tony Li
-
Description:
Tony, the live course was 5 days in person, some of the course was done in French, and about half of the course was in English
Introduction To Bioinformatics Analysis Of Plasmodium Falciparum Genome Data Training 2022
Module: 7. Workflow management and Nextflow Conda environment
Material type: Videos
Course Level: Beginner
, Intermediate
Submitted by Mr Tony Li
-
Description:
Tony, the live course was 5 days in person, some of the course was done in French, and about half of the course was in English
Introduction To Bioinformatics Analysis Of Plasmodium Falciparum Genome Data Training 2022
Module: 5. Workflows. Metagenomic analysis and Genome Analysis Pipeline
Material type: Videos
Course Level: Beginner
, Intermediate
Submitted by Mr Tony Li
-
Description:
Tony, the live course was 5 days in person, some of the course was done in French, and about half of the course was in English
Introduction To Bioinformatics Analysis Of Plasmodium Falciparum Genome Data Training 2022
Module: 4. Git, version control. QC/Sequence assembly
Material type: Videos
Course Level: Beginner
, Intermediate
Submitted by Mr Tony Li
-
Description:
Tony, the live course was 5 days in person, some of the course was done in French, and about half of the course was in English
Introduction To Bioinformatics Analysis Of Plasmodium Falciparum Genome Data Training 2022
Module: 3. Machine learning/modeling
Material type: Videos
Course Level: Beginner
, Intermediate
Submitted by Mr Tony Li
-
Description:
Tony, the live course was 5 days in person, some of the course was done in French, and about half of the course was in English
Introduction To Bioinformatics Analysis Of Plasmodium Falciparum Genome Data Training 2022
Module: 2. Phylodynamics and phylogeography
Material type: Videos
Course Level: Beginner
, Intermediate
Submitted by Mr Tony Li
-
Description:
Tony, the live course was 5 days in person, some of the course was done in French, and about half of the course was in English