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110 results - showing 61 - 70
Year created: N/A
Latest update: N/A
Introduction to multiple sequence alignments
Material type: Lectures , Notes
Course Level: Basic
Submitted by Mr Jean Safari -
Year created: N/A
Year latest update: N/A

Description:
An introduction to multiple sequence alignments(MSAs) for biologists with a focus of protein alignments. Description of methods to build MSAs as well as the interpretation of MSAs(structural and evolutionary). Includes an introduction to JalView which is used for the visualisation and manipulation of MSAs

Year created: 2013
Latest update: N/A
Introduction to Bioinformatics
Material type: Lectures , Notes
Course Level: Beginner
Submitted by Mr Jean Safari -
Year created: 2013
Year latest update: N/A

Description:
General introduction to the concept of bioinformatics focusing on the generation and accuracy of data in online databases using UniProt as an example

Year created: N/A
Latest update: N/A
Interpreting phylogenies
Material type: Lectures , Notes , Exercises , Solutions
Course Level: Basic , Intermediate
Submitted by Mr Jean Safari -
Year created: N/A
Year latest update: N/A

Description:
Application of phylogenetic approaches, introduction to phylogenetic terms and methods, multiple sequence alignment theory, structural alignments, interpretation of phylogenetic trees

Year created: N/A
Latest update: N/A
Introductions to Linux, Perl and Python
Material type: Lectures , Notes , Exercises , Solutions
Course Level: Basic
Submitted by Mr Jean Safari -
Year created: N/A
Year latest update: N/A

Description:
Introduction to Unix, Perl and Python for bioinformatics analyses.

Year created: N/A
Latest update: N/A
Introduction to Unix
Material type: Lectures , Notes
Course Level: Basic
Submitted by Mr Jean Safari -
Year created: N/A
Year latest update: N/A

Description:
Basic introduction to Unix, Linux, command line

Year created: N/A
Latest update: N/A
Next Generation Sequencing (NGS) Wikibook
Material type: Books
Course Level: Basic , Intermediate , Advanced
Submitted by Mr Jean Safari -
Year created: N/A
Year latest update: N/A

Description:
Various chapters dealing with the theoretical and practical aspects of NGS data generation and analysis. Starts with the basic concepts of sequencing technologies to data analysis approaches for various NGS datasets including WGS, RNAseq, Bisulphite sequencing, De novo assembly etc.

Year created: N/A
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Bioinformatics : Gene-protein-structure function
Material type: Notes
Course Level: Basic
Submitted by Mr Jean Safari -
Year created: N/A
Year latest update: N/A

Description:
Examination of in silico tools available for protein structure and function prediction.Includes background information on the major protein family databases(PROSITE, PRINTS, Pfam). Examines some integrated approaches for protein structure-function predictions using tools such as GeneQuiz, MAGPIE, InterPro)

Year created: N/A
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InterPro: An introduction
Material type: Notes
Course Level: Basic
Submitted by Mr Jean Safari -
Year created: N/A
Year latest update: N/A

Description:
Introduction to the InterPro database, including background on how the database was developed and what data it houses and its relevance

Year created: N/A
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PRINTS: A family protein database with a difference
Material type: Notes
Course Level: Basic
Submitted by Mr Jean Safari -
Year created: N/A
Year latest update: N/A

Description:
Introduction to protein family analysis with a focus on motif based methods and proten fingerprinting. Demonstration of protein fingerprint based approach using PRINTS including interpretation of results and differences between approaches

Year created: N/A
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Parsing data records using Python programming
Material type: Lectures , Notes
Course Level: Basic
Submitted by Mr Jean Safari -
Year created: N/A
Year latest update: N/A

Description:
Introduction to parsing data files using Python with practical examples given