Online courses
Introduction to Unix
Material type: Lectures
, Notes
Course Level: Basic
Submitted by Mr Jean Safari
-
Submitter description:
Basic introduction to Unix, Linux, command line
Parsing data records using Python programming
Material type: Lectures
, Notes
Course Level: Basic
Submitted by Mr Jean Safari
-
Submitter description:
Introduction to parsing data files using Python with practical examples given
PRINTS: A family protein database with a difference
Material type: Notes
Course Level: Basic
Submitted by Mr Jean Safari
-
Submitter description:
Introduction to protein family analysis with a focus on motif based methods and proten fingerprinting. Demonstration of protein fingerprint based approach using PRINTS including interpretation of results and differences between approaches
InterPro: An introduction
Material type: Notes
Course Level: Basic
Submitted by Mr Jean Safari
-
Submitter description:
Introduction to the InterPro database, including background on how the database was developed and what data it houses and its relevance
Bioinformatics : Gene-protein-structure function
Material type: Notes
Course Level: Basic
Submitted by Mr Jean Safari
-
Submitter description:
Examination of in silico tools available for protein structure and function prediction.Includes background information on the major protein family databases(PROSITE, PRINTS, Pfam). Examines some integrated approaches for protein structure-function predictions using tools such as GeneQuiz, MAGPIE, InterPro)
Next Generation Sequencing (NGS) Wikibook
Material type: Books
Course Level: Basic
, Intermediate
, Advanced
Submitted by Mr Jean Safari
-
Submitter description:
Various chapters dealing with the theoretical and practical aspects of NGS data generation and analysis. Starts with the basic concepts of sequencing technologies to data analysis approaches for various NGS datasets including WGS, RNAseq, Bisulphite sequencing, De novo assembly etc.
Linear Motifs and Phosphorylation sites
Material type: Lectures
, Notes
Course Level: Basic
Submitted by Mr Jean Safari
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Submitter description:
Introduction to linear motifs and phosphorylation sites (P-sites). Overview of computational tools and approaches available to predict linear motifs and P-sites.
Introductions to Linux, Perl and Python
Material type: Lectures
, Notes
, Exercises
, Solutions
Course Level: Basic
Submitted by Mr Jean Safari
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Submitter description:
Introduction to Unix, Perl and Python for bioinformatics analyses.
Interpreting phylogenies
Material type: Lectures
, Notes
, Exercises
, Solutions
Course Level: Basic
, Intermediate
Submitted by Mr Jean Safari
-
Submitter description:
Application of phylogenetic approaches, introduction to phylogenetic terms and methods, multiple sequence alignment theory, structural alignments, interpretation of phylogenetic trees
Introduction to Bioinformatics
Material type: Lectures
, Notes
Course Level: Beginner
Submitted by Mr Jean Safari
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Submitter description:
General introduction to the concept of bioinformatics focusing on the generation and accuracy of data in online databases using UniProt as an example